PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8507_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 500aa    MW: 55249.6 Da    PI: 8.3362
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8507_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-056989323
                ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                C++Cgk F r  nL+ H r H
  RrC8507_p2 69 CEICGKGFQRDQNLQLHRRGH 89
                *******************88 PP

2zf-C2H213.40.00023143165123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k++  +s+ k H +t+
  RrC8507_p2 143 WKCEKCSKRYAVQSDWKAHSKTC 165
                 58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.4E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.91E-66689No hitNo description
PROSITE profilePS5015711.4896789IPR007087Zinc finger, C2H2
SMARTSM003550.0766789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-4131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.91E-6138163No hitNo description
SMARTSM00355130143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MTAEDQTISS SGGYVQSLST TDHVDHHHER ESFNPPAKKK RNLPGNPDPE AEVIALSPKT  60
LMATNRFLCE ICGKGFQRDQ NLQLHRRGHN LPWKLKQRTT KEVRKRVYVC PEKSCVHHHP  120
TRALGDLTGI KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY RCDCGTIFSR  180
RDSFITHRAF CDALAEETAR LNAASHLKSL TSNNLNYHYL MGTLIPSPQP PPPPFPFGPP  240
QPPQHHHHHF PITTNTFDHH HNDVMKPASS LSLWMGGNIN HHGVTIDDGI APQQQSPQDD  300
FSWSFGNANN RGELITTSDS LITHENINIF PSKENANAAT SLSVPSLFSS VDHITQDANA  360
AASAVANMSA TALLQKAAQM GVTSSTPSTT ITTNQSTFHQ SFALKTSDQS QIVEDGGSDK  420
FFALFGPNSV GLMSNNGLQH ENENPRSGVT VVSEFGELHN YPLKRRRVES GDAGGGGQTR  480
DFLGVGVQTM CHSSSINGWI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1463467KRRRV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475014.10.0PREDICTED: zinc finger protein MAGPIE-like isoform X1
SwissprotQ9ZWA60.0IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A078DLT70.0A0A078DLT7_BRANA; BnaA10g02200D protein
STRINGBra015271.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37102660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.10.0C2H2 family protein